1993 300e 3.2 liter coil #2 not firing

[mdsjsb]

I have just changed the wiring harness on my 300e, it was shot. New one went in easily. THe car is still running rough. Changed plugs, which uncovered the harness problem. Now I have switched coils and wires around and it seems that the cylinders for the second coil are not firing. DOes anyone know how to check the input side of the coils? I tried moving coils and the problem stayed indicating that the coils and wires are fine. Someone mentioned boots in a post, I moved them around also and the problem still remains on the same two cylinders. Any help would be appreciated.