There could indeed be a whole load of very irritating plugs that don't fit - but I doubt if a wiring diagram or people's experiences could pre-warn you of that.
I can say that the whole wiring loom for my W201 (1992 vintage) can be unravelled from the electronics boxes hidden behind the battery - I can then make a very big assumption and guess that the W124 is probably arranged in a similar way; assuming the worst happens then you should be able to unhook the engine loom from one car and transplant to the other.
Have you got EPC? If so you can see specific data for the specific VINs
Looking at the EPC parts diagrams on
EverythingBenz - Mercedes-Benz Forum and Web Search Using Google might also yield a warm wet feeling!